Hi there, I've been getting quite confused with configuring VisualMicro. 
After selecting the programmer, board type, and com point it seems to ignore these settings and use stk500v2 instead of avrispmkii, and 'usb' instead of the com point I chose. Any help much appreciated!

With verbose output on can see this:
Binary sketch size: 2,964 bytes (used 10% of a 30,720 byte maximum) (0.63 secs)
Minimum Memory Usage: 367 bytes (18% of a 2048 byte maximum)
Uploading to I/O board using 'AVRISP mkII'
Uploader started for board Arduino Pro or Pro Mini w/ ATmega328 (5V, 16 MHz)
Uploader will use programmer name: avrispmkii
C:\Program Files (x86)\Arduino\hardware\tools\avr\bin\avrdude "-CC:\Program Files (x86)\Arduino/hardware/tools/avr/etc/avrdude.conf" -v -patmega328p -cstk500v2 -Pusb atmega328/coolStuff.hex:i"
Error during upload using programmer

avrdude: Version 6.0.1, compiled on Apr  3 2014 at 23:12:16
         Copyright (c) 2000-2005 Brian Dean, http://www.bdmicro.com/
         Copyright (c) 2007-2009 Joerg Wunsch

         System wide configuration file is "C:\Program Files (x86)\Arduino/hardware/tools/avr/etc/avrdude.conf"

         Using Port                    : usb
         Using Programmer              : stk500v2
avrdude: usbdev_open(): did not find any USB device "usb"

The uploader returned an error