I recently updated Arduino IDE to 1.8.10 and Atmel Studio 7.0.2389. I am using Atmel Studio and vMicro to build and upload code to Arduino Zero boards and Adafruit Metro M0 Express boards. My project consists of roughly 10 .ino files and two .h files. One of my .h files contains the following includes:

#include <Arduino.h>
#include <Wire.h>
#include <Servo.h>
#include <SPI.h>
#include "Adafruit_MotorShield.h"
#include <Adafruit_GFX.h>
#include <Adafruit_SSD1306.h>

Prior to upgrading Atmel Studio 7 and the Arduino IDE, my code would build and upload successfully on Atmel Studio using vMicro.

After upgrading, a simple ino file that includes Wire.h builds and uploads properly via the Arduino IDE but Atmel Studio fails the build process for Arduino Zero boards as follows:

Build failed for project 'Topper_1'
Topper_1.ino:21: In file included from
 
Externs.h: 19:10: fatal error: Wire.h: No such file or directory
   #include <Wire.h>
   ^~~~~~~~
   compilation terminated

The same error occurs when building for the Adafruit Metro M0 Express board when the micro controller application is set to Arduino 1.6/1.8. 

However, a build for the Afafruit Metro M0 Express complete successfully when the micro controller application is set to Visual Micro (No IDE). This same change does not work for my Arduino Zero board.

Guidance to resolve this issue would be greatly appreciated.